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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
42
total RNA-seq
5
pCHi-C
WGBS
3
ATAC-seq
3
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
164
DNA binding
43
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
118
control
41
histone
41
histone modification
22
broad histone mark
19
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
72
November, 2017
33
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
February, 2020
12
December, 2017
10
October, 2019
9
October, 2017
4
March, 2020
3
February, 2021
3
May, 2019
1
December, 2018
1
February, 2023
1
July, 2019
1
November, 2018
Available data
889
bam
bigWig
619
bed narrowPeak
464
bigBed narrowPeak
463
fastq
200
tagAlign
195
tsv
103
bed broadPeak
94
bigBed broadPeak
40
bed bed3+
3
tar
2
bed bed3
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
224
Homo sapiens
Biosample type
155
tissue
69
cell line
Organ
276
pancreas
223
kidney
epithelium
167
heart
165
liver
110
connective tissue
101
bone element
80
vasculature
79
blood vessel
64
brain
62
adipose tissue
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
224
AMP
Genome assembly (visualization)
10
hg19
5
GRCh38
Lab
187
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
missing controlled_by
assay_title!
WGBS
files.file_type!
bigWig
organ_slims!
epithelium
BIOSAMPLE
ASSAY
224 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
1
1
1
1
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
right lobe of liver
3
1
1
+ See 24 more…
cell line
HepG2
52
9
2
1
2
2
1
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