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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
30
total RNA-seq
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
31
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
33
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
3
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
November, 2018
1
October, 2019
Available data
680
bam
bigWig
463
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
165
Homo sapiens
Biosample type
92
tissue
69
cell line
3
primary cell
1
in vitro differentiated cells
Organ
276
pancreas
223
kidney
176
epithelium
167
heart
165
liver
110
connective tissue
101
bone element
80
vasculature
79
blood vessel
64
brain
62
adipose tissue
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
128
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
WGBS
files.file_type!
bigWig
organ_slims!
ovary
pericardium
BIOSAMPLE
ASSAY
165 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
1
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
52
9
2
2
1
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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