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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
WGBS
3
Hi-C
Assay category
177
Transcription
97
DNA accessibility
3
3D chromatin structure
Date released
93
May, 2022
76
February, 2023
59
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
Available data
163
fastq
112
zippedFastqFolder
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
277
Homo sapiens
Biosample type
277
primary cell
Organ
105
epithelium
105
pancreas
Project
277
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3878
AMP-T2D consortium
343
Kyle Gaulton, UCSD
277
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
WGBS
files.file_type!
hdf5
organ_slims!
lung
BIOSAMPLE
ASSAY
277 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
4
1
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