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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
38
ATAC-seq
5
Hi-C
4
DNase-seq
WGBS
1
FAIRE-seq
1
RRBS
Assay category
96
DNA binding
43
DNA accessibility
5
3D chromatin structure
1
DNA methylation
Target of assay
71
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
Date released
50
May, 2019
47
October, 2019
35
February, 2023
February, 2021
June, 2019
6
November, 2017
5
July, 2019
2
March, 2020
Available data
114
bed narrowPeak
110
bam
91
bigWig
76
bigBed narrowPeak
tsv
10
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
6
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
145
Homo sapiens
Biosample type
114
tissue
31
primary cell
Organ
607
liver
480
pancreas
307
epithelium
249
kidney
230
brain
176
connective tissue
168
heart
145
vasculature
141
blood vessel
83
adipose tissue
76
limb
69
blood
69
bodily fluid
67
artery
49
eye
43
musculature of body
38
nerve
23
embryo
22
spleen
22
vein
19
lung
9
bone element
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
145
AMP
Genome assembly (visualization)
113
GRCh38
89
hg19
Lab
145
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
WGBS
files.file_type!
tsv
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
ATAC-seq
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
coronary artery
5
36
tibial artery
23
1
2
thoracic aorta
16
1
ascending aorta
16
aorta
13
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
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