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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
34
DNase-seq
4
total RNA-seq
WGBS
2
small RNA-seq
1
ATAC-seq
Assay category
37
DNA binding
35
DNA accessibility
6
Transcription
Target of assay
20
histone
20
histone modification
12
broad histone mark
11
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
7
December, 2018
7
January, 2019
7
May, 2019
7
November, 2018
4
July, 2019
2
March, 2020
1
October, 2017
Available data
81
bigWig
78
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
24
fastq
15
tagAlign
10
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
78
Homo sapiens
Biosample type
65
tissue
13
primary cell
Organ
685
pancreas
680
liver
591
connective tissue
440
adipose tissue
317
epithelium
243
brain
205
heart
183
vasculature
178
blood vessel
144
kidney
113
limb
102
artery
66
bone element
60
blood
60
bodily fluid
56
musculature of body
42
nerve
36
embryo
22
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
78
AMP
Genome assembly (visualization)
67
hg19
66
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
tissue
spleen
20
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
skeletal muscle tissue
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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