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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
16
ChIP-seq
Assay category
151
DNA accessibility
16
DNA binding
Target of assay
90
histone
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
77
August, 2021
65
February, 2023
20
May, 2022
5
May, 2024
Available data
bam
2265
bigWig
1580
tsv
1096
fastq
963
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
247
bed bed3+
161
txt
112
zippedFastqFolder
77
tagAlign
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
167
Homo sapiens
Biosample type
152
tissue
11
cell line
4
in vitro differentiated cells
Organ
64
kidney
40
heart
35
artery
35
blood vessel
35
vasculature
31
liver
27
eye
12
epithelium
3
connective tissue
1
adipose tissue
Project
167
AMP
Genome assembly (visualization)
104
GRCh38
63
hg19
Lab
64
Katalin Susztak, Upenn
63
AMP-T2D consortium
20
Karen Mohlke, UNC
11
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bam
organ_slims!
embryo
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
pigmented layer of retina
12
+ See 2 more…
cell line
HepG2
11
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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