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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
42
ATAC-seq
Assay category
81
DNA binding
42
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
38
broad histone mark
3
transcription factor
2
RNA binding protein
Date released
32
August, 2017
32
September, 2018
31
November, 2019
18
May, 2022
4
October, 2017
3
March, 2020
3
May, 2021
Available data
685
bam
619
bigWig
461
fastq
411
tsv
214
bed narrowPeak
bigBed narrowPeak
39
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
123
Homo sapiens
Biosample type
61
tissue
46
primary cell
14
cell line
2
in vitro differentiated cells
Organ
123
pancreas
97
heart
83
liver
79
kidney
76
brain
73
epithelium
50
blood vessel
50
connective tissue
50
vasculature
49
artery
27
eye
13
musculature of body
8
bone element
8
limb
8
skeleton
6
embryo
4
adipose tissue
1
nerve
1
pituitary gland
1
spleen
Project
119
AMP
4
T1D
Genome assembly (visualization)
123
hg19
99
GRCh38
Lab
105
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
WGBS
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
20
37
body of pancreas
4
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
pancreatic alpha cell
7
pancreatic beta cell
7
cell line
EndoC_BH1
13
1
in vitro differentiated cells
pancreatic PP cell
2
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