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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
WGBS
39
ATAC-seq
21
snATAC-seq
1
Hi-C
Assay category
60
DNA accessibility
52
Transcription
1
3D chromatin structure
Date released
93
May, 2022
19
September, 2020
1
March, 2019
Available data
3374
bam
3152
bigWig
1817
bed narrowPeak
1593
tsv
1341
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
113
Homo sapiens
Biosample type
112
primary cell
1
tissue
Organ
40
pancreas
39
epithelium
Project
112
HPAP
1
AMP
Genome assembly (visualization)
1
hg19
Lab
112
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
assay_title!
WGBS
organ_slims!
esophagus
BIOSAMPLE
ASSAY
113 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
islet of Langerhans
1
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