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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
WGBS
4
RRBS
2
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
128
Transcription
27
DNA accessibility
4
DNA methylation
2
DNA binding
1
3D chromatin structure
Target of assay
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Date released
76
February, 2023
39
February, 2021
38
September, 2020
4
August, 2017
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
October, 2017
1
September, 2018
Available data
bam
bigWig
1817
bed narrowPeak
1594
tsv
1341
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
163
Homo sapiens
Biosample type
156
primary cell
4
tissue
2
cell line
1
in vitro differentiated cells
Organ
53
epithelium
53
pancreas
3
liver
2
musculature of body
1
adipose tissue
1
brain
1
connective tissue
Project
153
HPAP
10
AMP
Genome assembly (visualization)
4
hg19
Lab
153
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
27
audit script error
Audit category:
1
missing controlled_by
assay_title!
WGBS
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
163 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
RRBS
ChIP-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
pancreatic cell
2
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tissue
skeletal muscle tissue
2
brain
1
liver
1
cell line
HepG2
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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