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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
Assay category
106
Transcription
Date released
51
May, 2021
45
May, 2020
10
August, 2021
Available data
310
bigWig
bed narrowPeak
205
bam
150
fastq
112
zippedFastqFolder
106
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
106
Homo sapiens
Biosample type
96
primary cell
9
cell line
1
tissue
Organ
9
liver
1
pancreas
Project
96
T1D
10
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
AMP-T2D consortium
96
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bed narrowPeak
lab.title!
AMP-T2D consortium
month_released!
February, 2021
BIOSAMPLE
ASSAY
106 results
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total RNA-seq
primary cell
monocyte
53
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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cell line
HepG2
9
tissue
islet of Langerhans
1
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