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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
Assay category
63
Transcription
3
DNA accessibility
Date released
57
August, 2021
6
May, 2022
3
February, 2023
Available data
310
bigWig
274
bed narrowPeak
205
bam
189
fastq
112
zippedFastqFolder
106
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
66
Homo sapiens
Biosample type
63
tissue
3
in vitro differentiated cells
Organ
57
kidney
6
pancreas
Project
66
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
lab.title!
AMP-T2D consortium
organ_slims!
stomach
BIOSAMPLE
ASSAY
66 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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