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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
WGBS
39
ATAC-seq
21
snATAC-seq
1
whole genome sequencing assay
Assay category
60
DNA accessibility
52
Transcription
1
DNA sequencing
Date released
93
May, 2022
19
September, 2020
1
August, 2021
Available data
2662
bam
2483
bigWig
1720
bed narrowPeak
1204
fastq
1014
bigBed narrowPeak
1012
tsv
368
tagAlign
312
bed broadPeak
276
bigBed broadPeak
245
bed bed3+
112
zippedFastqFolder
72
txt
64
xls
23
hic
22
bedpe bed3+
18
bed bedMethyl
18
bigBed bedMethyl
5
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
113
Homo sapiens
Biosample type
112
primary cell
1
cell line
Organ
39
epithelium
39
pancreas
1
liver
Project
112
HPAP
1
AMP
Lab
112
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
assay_title!
WGBS
month_released!
February, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
113 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
whole genome sequencing assay
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
HepG2
1
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