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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • WGBS
Assay category
  • 133DNA binding
  • 65Transcription
  • 26DNA accessibility
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 16November, 2018
  • 15February, 2018
  • 9August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 222fastq
  • 206bam
  • 156bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 41tsv
  • 6txt
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 224Homo sapiens
Biosample type
  • 88cell line
  • 77tissue
  • 44primary cell
  • 15in vitro differentiated cells
Organ
  • 75pancreas
  • 48liver
  • 45blood
  • 45bodily fluid
  • 34epithelium
  • 23adipose tissue
  • 23connective tissue
  • 8spleen
  • 4embryo
Project
  • 206AMP
  • 18HPAP
Genome assembly (visualization)
  • 174hg19
  • 156GRCh38
Lab
  • 182AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 18Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
assay_title!
  • WGBS
BIOSAMPLE
ASSAY

224 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
cell line
GM1287845
HepG243
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
pancreatic alpha cell154
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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