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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
WGBS
Assay category
51
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
56
October, 2019
32
June, 2019
6
February, 2021
5
May, 2019
4
July, 2019
3
February, 2020
Available data
99
bam
78
bed narrowPeak
76
bigWig
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
Organism
106
Homo sapiens
Biosample type
106
tissue
Organ
821
pancreas
726
liver
645
connective tissue
473
adipose tissue
428
epithelium
345
heart
339
kidney
208
vasculature
203
blood vessel
169
brain
159
bone element
135
artery
106
limb
82
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
82
GRCh38
82
hg19
Lab
106
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
lab.title!
Stephen Parker, UMich
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
27
2
1
5
tibial artery
19
2
1
1
muscle of leg
5
13
muscle of arm
17
gastrocnemius medialis
1
4
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