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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
14
total RNA-seq
WGBS
2
pCHi-C
1
ATAC-seq
1
DNase-seq
1
GRO-seq
Assay category
42
DNA binding
14
Transcription
2
DNA accessibility
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
13
February, 2018
8
August, 2021
7
December, 2018
7
January, 2019
7
November, 2018
2
March, 2020
2
May, 2021
1
January, 2018
1
October, 2017
Available data
58
bam
49
fastq
43
bigWig
28
bed narrowPeak
16
tsv
13
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
29
in vitro differentiated cells
23
tissue
9
cell line
Organ
894
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
1
hg18
Lab
61
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
WGBS
month_released!
August, 2022
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
1
1
1
cell line
H1-hESC
8
MCF-7
1
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