Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
68
ChIP-seq
6
ATAC-seq
WGBS
3
pCHi-C
3
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
68
DNA binding
7
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
51
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
434
bam
417
bigWig
402
tsv
35
fastq
8
tagAlign
7
bed narrowPeak
5
bed bed3+
4
bigBed narrowPeak
2
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
479
Homo sapiens
Biosample type
477
tissue
2
primary cell
1
in vitro differentiated cells
Organ
883
pancreas
695
liver
667
connective tissue
479
adipose tissue
469
epithelium
374
heart
351
kidney
281
brain
229
vasculature
224
blood vessel
159
bone element
140
artery
121
limb
95
musculature of body
60
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
480
AMP
Genome assembly (visualization)
420
hg19
416
GRCh38
Lab
480
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
WGBS
month_released!
November, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
480 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
1
white adipose tissue
12
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download