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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
49
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
RNA binding protein
10
chromatin remodeller
6
control
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
11
January, 2019
8
January, 2021
1
January, 2018
Available data
49
bam
49
fastq
44
bigWig
43
bed narrowPeak
43
bigBed narrowPeak
Organism
58
Homo sapiens
Biosample type
50
cell line
8
primary cell
Organ
691
pancreas
626
liver
589
connective tissue
447
adipose tissue
371
epithelium
321
kidney
277
heart
159
bone element
158
vasculature
154
blood vessel
120
artery
96
brain
72
limb
62
musculature of body
58
blood
58
bodily fluid
57
eye
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
8
T1D
Genome assembly (visualization)
44
hg19
43
GRCh38
Lab
50
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
WGBS
month_released!
November, 2019
target.investigated_as!
RNA binding protein
histone
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
49
1
primary cell
peripheral blood mononuclear cell
8
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