Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
13
ATAC-seq
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
114
Transcription
15
DNA accessibility
15
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
133
bigWig
122
bam
114
tsv
51
fastq
15
bed bedMethyl
15
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
152
Homo sapiens
Biosample type
81
primary cell
71
tissue
Organ
53
epithelium
52
pancreas
20
connective tissue
18
brain
17
heart
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
9
liver
9
musculature of body
4
limb
3
artery
2
pericardium
1
eye
Project
145
AMP
7
HPAP
Genome assembly (visualization)
140
hg19
127
GRCh38
Lab
145
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assay_title!
WGBS
month_released!
February, 2021
BIOSAMPLE
ASSAY
152 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
small RNA-seq
RRBS
ATAC-seq
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
3
5
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 30 more…
tissue
islet of Langerhans
6
1
heart left ventricle
2
1
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
See all biosamples
Download