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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
49
single cell RNA-seq
3
Hi-C
2
total RNA-seq
1
MPRA
Assay category
74
DNA binding
51
Transcription
3
3D chromatin structure
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
125
bam
104
fastq
96
bigWig
51
tsv
45
bed narrowPeak
45
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
128
Homo sapiens
Biosample type
80
tissue
48
primary cell
1
cell line
Organ
95
pancreas
38
epithelium
25
connective tissue
23
adipose tissue
Project
126
AMP
3
HPAP
Genome assembly (visualization)
99
hg19
96
GRCh38
Lab
126
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent control read length
assay_title!
WGBS
month_released!
February, 2020
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
MPRA
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
6
+ See 1 more…
primary cell
pancreatic acinar cell
6
1
2
pancreatic delta cell
7
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
cell line
MIN6
1
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