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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
120
total RNA-seq
20
RRBS
WGBS
15
small RNA-seq
10
ATAC-seq
7
Hi-C
4
DNase-seq
3
FAIRE-seq
3
single cell RNA-seq
Assay category
179
DNA binding
138
Transcription
20
DNA methylation
17
DNA accessibility
7
3D chromatin structure
Target of assay
130
histone modification
129
histone
69
broad histone mark
60
narrow histone mark
39
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
283
August, 2017
254
February, 2021
200
June, 2019
191
February, 2023
166
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
80
April, 2019
80
November, 2018
78
July, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
268
bam
267
bigWig
214
fastq
138
tsv
103
bed narrowPeak
63
tagAlign
41
bigBed narrowPeak
39
bed broadPeak
25
bed bed3+
18
bed bedMethyl
18
bigBed bedMethyl
14
bigBed broadPeak
3
hdf5
Organism
354
Homo sapiens
Biosample type
279
tissue
82
primary cell
Organ
194
pancreas
connective tissue
63
adipose tissue
60
liver
42
epithelium
35
musculature of body
18
brain
17
heart
11
kidney
10
vasculature
9
blood vessel
4
limb
3
artery
2
pericardium
1
eye
Project
361
AMP
Genome assembly (visualization)
285
hg19
239
GRCh38
Lab
361
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
month_released!
November, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
Hi-C
DNase-seq
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
42
89
1
1
1
liver
48
2
1
1
skeletal muscle tissue
22
1
4
1
pancreas
14
1
right lobe of liver
2
2
1
1
+ See 20 more…
primary cell
skeletal muscle myoblast
15
1
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cerebellar granule cell
2
+ See 17 more…
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