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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
73
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Hi-C
1
whole genome sequencing assay
Assay category
179
Transcription
80
DNA accessibility
43
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
341
May, 2020
336
May, 2021
310
August, 2021
292
October, 2019
228
February, 2021
196
June, 2019
135
February, 2023
118
May, 2019
96
May, 2022
95
August, 2017
94
December, 2017
80
April, 2019
77
November, 2018
72
July, 2019
48
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
19
April, 2020
17
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
5
March, 2023
5
November, 2019
2
June, 2018
1
October, 2022
1
September, 2018
Available data
122
tsv
104
bed narrowPeak
64
xls
57
txt
49
bam
45
bigWig
24
tagAlign
3
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
310
Homo sapiens
Biosample type
226
tissue
42
cell line
38
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
connective tissue
pancreas
2
artery
1
adipose tissue
Project
310
AMP
Genome assembly (visualization)
105
GRCh38
56
hg19
Lab
148
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
month_released!
February, 2020
organ_slims!
connective tissue
pancreas
BIOSAMPLE
ASSAY
310 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
primary cell
hepatocyte
4
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