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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
5
ChIP-seq
3
small RNA-seq
2
Hi-C
1
ATAC-seq
1
RRBS
WGBS
1
pCHi-C
Assay category
9
Transcription
5
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
5
histone
5
histone modification
3
broad histone mark
2
narrow histone mark
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
November, 2018
51
August, 2017
40
May, 2022
35
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
15
bam
15
bigWig
10
tsv
6
bed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
19
Homo sapiens
Biosample type
16
tissue
3
primary cell
Organ
106
brain
73
limb
61
vasculature
60
blood vessel
54
epithelium
43
kidney
42
nerve
38
pancreas
32
heart
29
artery
24
connective tissue
22
eye
22
vein
19
liver
14
adipose tissue
14
musculature of body
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
ChIP-seq
small RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
liver
4
5
1
1
1
right lobe of liver
2
2
primary cell
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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