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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
7
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
7
DNA binding
Target of assay
12
histone
histone modification
8
narrow histone mark
7
control
4
broad histone mark
transcription factor
Date released
8
August, 2021
7
February, 2018
4
December, 2017
2
May, 2021
1
January, 2018
Available data
21
bam
15
bigWig
14
tsv
12
fastq
1
bed bed3+
Organism
22
Homo sapiens
Biosample type
14
in vitro differentiated cells
8
cell line
Organ
725
pancreas
560
connective tissue
436
adipose tissue
375
epithelium
345
liver
314
kidney
271
heart
159
bone element
154
vasculature
150
blood vessel
116
artery
96
brain
72
limb
musculature of body
57
eye
22
embryo
20
lung
19
nerve
18
ureter
17
blood
17
bodily fluid
16
skeleton
11
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
22
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
WGBS
organ_slims!
musculature of body
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
22 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
5
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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