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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
12
ChIP-seq
2
DNase-seq
1
GRO-seq
1
RRBS
Assay category
14
Transcription
12
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
histone
13
histone modification
9
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
8
August, 2021
7
December, 2017
7
February, 2018
2
June, 2019
2
May, 2021
2
November, 2017
1
January, 2018
1
July, 2019
Available data
28
bam
22
bigWig
17
fastq
14
tsv
6
bed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
30
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
5
primary cell
Organ
744
pancreas
684
liver
600
connective tissue
453
adipose tissue
384
epithelium
324
kidney
288
heart
163
vasculature
159
bone element
blood vessel
121
artery
99
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
23
hg19
21
GRCh38
1
hg18
Lab
30
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
WGBS
organ_slims!
blood vessel
target.investigated_as!
histone
BIOSAMPLE
ASSAY
30 results
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total RNA-seq
ChIP-seq
DNase-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
choroid plexus epithelial cell
2
1
1
smooth muscle cell of the brain vasculature
1
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