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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
8
ChIP-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
38
DNA accessibility
9
Transcription
8
3D chromatin structure
8
DNA binding
5
DNA methylation
Target of assay
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
35
June, 2019
9
July, 2019
7
August, 2017
6
March, 2020
6
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
47
bam
43
bigWig
36
bed bed3+
36
bed narrowPeak
36
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
9
tsv
4
hic
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
2
fastq
2
tagAlign
1
tar
1
txt
Organism
69
Homo sapiens
Biosample type
56
tissue
13
primary cell
Organ
744
pancreas
684
liver
600
connective tissue
453
adipose tissue
384
epithelium
324
kidney
288
heart
163
vasculature
159
bone element
158
blood vessel
121
artery
99
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
51
hg19
41
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
2
audit script error
2
inconsistent ontology term
assay_title!
WGBS
organ_slims!
embryo
target.investigated_as!
histone
BIOSAMPLE
ASSAY
69 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
3
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
endothelial cell of umbilical vein
2
2
2
1
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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