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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
103
total RNA-seq
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
103
Transcription
13
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
217
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
220
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
275
Homo sapiens
Biosample type
223
primary cell
tissue
47
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
Project
193
T1D
82
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
1471
AMP-T2D consortium
324
Klaus Kaestner, Upenn
275
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
assay_title!!
pCHi-C
biosample_type!
tissue
files.file_type!
bedpe
BIOSAMPLE
ASSAY
275 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
peripheral blood mononuclear cell
8
B cell
2
T follicular helper cell
2
+ See 21 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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