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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
219
total RNA-seq
186
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
267
DNA accessibility
224
DNA binding
221
Transcription
57
DNA methylation
6
3D chromatin structure
Target of assay
188
histone
188
histone modification
96
broad histone mark
92
narrow histone mark
28
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
190
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
September, 2018
59
August, 2017
51
June, 2019
35
February, 2021
23
July, 2019
19
September, 2020
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
Available data
412
bigWig
404
bam
228
bed narrowPeak
203
fastq
142
tsv
101
zippedFastqFolder
100
tagAlign
74
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
28
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
hdf5
1
bed bed3
Organism
775
Homo sapiens
Biosample type
2446
tissue
775
primary cell
590
cell line
387
in vitro differentiated cells
6
stem cell
Organ
275
epithelium
200
pancreas
vasculature
36
kidney
33
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
347
AMP
239
HPAP
188
T1D
1
ITG
Genome assembly (visualization)
424
hg19
342
GRCh38
Lab
312
AMP-T2D consortium
239
Klaus Kaestner, Upenn
223
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
30
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
pCHi-C
single cell RNA-seq
month_released!
September, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
775 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
pancreatic alpha cell
13
42
32
31
1
pancreatic beta cell
13
11
19
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
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