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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
398
Transcription
73
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
9
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
422
bigWig
397
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
485
Homo sapiens
Biosample type
485
tissue
1
primary cell
Organ
943
pancreas
785
liver
676
connective tissue
524
epithelium
486
adipose tissue
332
heart
328
kidney
280
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
93
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
486
AMP
Genome assembly (visualization)
423
hg19
421
GRCh38
Lab
486
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
small RNA-seq
month_released!
April, 2019
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
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