Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
100
ChIP-seq
22
ATAC-seq
3
DNase-seq
3
Hi-C
3
WGBS
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
100
DNA binding
25
DNA accessibility
4
DNA methylation
4
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
50
May, 2020
26
August, 2017
26
August, 2021
20
May, 2022
6
July, 2019
6
October, 2019
2
February, 2021
2
June, 2019
1
March, 2020
Available data
522
bam
463
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
3
tsv
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
139
Homo sapiens
Biosample type
107
tissue
23
cell line
9
primary cell
Organ
318
heart
292
kidney
255
pancreas
246
brain
217
epithelium
168
vasculature
165
blood vessel
139
liver
115
limb
105
connective tissue
96
bone element
87
musculature of body
85
artery
48
adipose tissue
38
eye
38
nerve
22
vein
19
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
139
AMP
Genome assembly (visualization)
80
hg19
34
GRCh38
Lab
97
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
pCHi-C
total RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
78
20
1
2
1
1
right lobe of liver
1
1
2
cell line
HepG2
18
1
1
2
1
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download