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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
pCHi-C
28
ChIP-seq
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
28
DNA binding
10
3D chromatin structure
4
DNA accessibility
Target of assay
14
transcription factor
10
histone
10
histone modification
6
RNA binding protein
6
chromatin remodeller
6
narrow histone mark
4
broad histone mark
4
control
Date released
406
November, 2017
322
August, 2017
280
October, 2019
245
August, 2021
218
June, 2019
200
May, 2021
174
May, 2022
168
February, 2021
150
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
48
July, 2018
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
17
March, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
28
bam
28
bigWig
25
fastq
24
bed narrowPeak
21
bigBed narrowPeak
10
bedpe bed3+
10
hic
2
tsv
Organism
42
Homo sapiens
Biosample type
21
cell line
18
tissue
2
in vitro differentiated cells
1
primary cell
Organ
18
blood
18
bodily fluid
8
pancreas
7
spleen
4
epithelium
2
blood vessel
2
heart
2
musculature of body
2
vasculature
1
liver
1
vein
Project
39
AMP
3
T1D
Genome assembly (visualization)
38
hg19
24
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
pCHi-C
total RNA-seq
month_released!
September, 2018
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
cell line
GM12878
18
EndoC_BH1
1
2
tissue
spleen
7
islet of Langerhans
2
2
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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