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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
87
single cell RNA-seq
60
ChIP-seq
56
snATAC-seq
44
total RNA-seq
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
173
DNA accessibility
131
Transcription
60
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
39
histone
39
histone modification
26
broad histone mark
20
control
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
102
May, 2020
54
May, 2022
51
February, 2023
41
May, 2021
40
September, 2020
39
February, 2021
13
July, 2019
12
October, 2019
8
January, 2021
8
June, 2019
5
August, 2017
3
November, 2017
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
109
fastq
94
bigWig
73
zippedFastqFolder
71
bam
34
bed narrowPeak
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
2
csv
2
hic
2
tagAlign
1
bedpe bed3+
1
tar
Organism
381
Homo sapiens
Biosample type
775
tissue
381
primary cell
155
cell line
123
in vitro differentiated cells
3
stem cell
Organ
181
epithelium
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
5
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
Project
201
AMP
172
HPAP
8
T1D
Genome assembly (visualization)
442
hg19
GRCh38
Lab
172
Klaus Kaestner, Upenn
166
AMP-T2D consortium
43
Kyle Gaulton, UCSD
Audit category:
28
audit script error
17
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
files.file_type!
xls
organ_slims!
pancreas
BIOSAMPLE
ASSAY
381 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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