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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
26
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
2
March, 2020
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tsv
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
42
Homo sapiens
Biosample type
39
tissue
3
primary cell
Organ
310
pancreas
257
liver
230
epithelium
147
kidney
124
heart
113
connective tissue
92
bone element
67
brain
65
adipose tissue
51
eye
44
vasculature
42
blood vessel
42
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
8
embryo
8
skeleton
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
pituitary gland
1
skin of body
1
spinal cord
Project
42
AMP
Genome assembly (visualization)
73
hg19
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
muscle of leg
2
psoas muscle
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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