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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
7
WGBS
4
Hi-C
4
total RNA-seq
pCHi-C
2
RRBS
1
RNA microarray
1
single cell RNA-seq
Assay category
66
DNA binding
9
DNA methylation
5
Transcription
4
3D chromatin structure
Target of assay
36
histone
36
histone modification
30
control
24
broad histone mark
12
narrow histone mark
Date released
53
August, 2017
18
October, 2018
5
July, 2019
4
February, 2020
2
June, 2019
1
August, 2021
1
May, 2019
1
May, 2022
Available data
25
bam
22
fastq
9
tagAlign
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
bigWig
Organism
84
Homo sapiens
Biosample type
83
tissue
2
primary cell
Organ
287
pancreas
223
kidney
213
epithelium
202
heart
164
liver
120
brain
91
connective tissue
88
bone element
blood vessel
70
vasculature
63
adipose tissue
48
artery
26
limb
23
eye
22
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
85
AMP
Genome assembly (visualization)
hg19
477
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
assembly!
hg19
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
WGBS
Hi-C
total RNA-seq
RRBS
RNA microarray
single cell RNA-seq
tissue
subcutaneous abdominal adipose tissue
35
3
skeletal muscle tissue
9
2
1
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
gastrocnemius medialis
4
1
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primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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