Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
1
Hi-C
Assay category
34
DNA binding
1
3D chromatin structure
Target of assay
25
histone
25
histone modification
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
15
December, 2017
14
August, 2017
3
August, 2021
2
September, 2017
1
October, 2019
Available data
2516
bam
2482
bigWig
1400
tsv
1207
bed narrowPeak
626
bigBed narrowPeak
539
fastq
246
bed broadPeak
239
bed bed3+
237
tagAlign
bigBed broadPeak
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
35
Homo sapiens
Biosample type
15
tissue
13
in vitro differentiated cells
3
primary cell
3
stem cell
1
cell line
Organ
15
pancreas
4
liver
3
embryo
3
epithelium
1
connective tissue
Project
35
AMP
Genome assembly (visualization)
48
hg19
35
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
files.file_type!
bigBed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
35 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
tissue
islet of Langerhans
14
liver
1
in vitro differentiated cells
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
adipocyte
1
primary cell
hepatocyte
3
stem cell
hESC
3
cell line
Panc1
1
Download