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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
169
single cell RNA-seq
136
total RNA-seq
85
RNA microarray
26
snATAC-seq
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
305
Transcription
292
DNA binding
244
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
106
August, 2017
96
February, 2021
95
February, 2023
78
October, 2019
47
September, 2023
45
May, 2022
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
March, 2020
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
1
December, 2019
1
January, 2019
1
May, 2021
Available data
1889
bam
bigWig
1049
tsv
966
bed narrowPeak
543
bigBed narrowPeak
377
fastq
238
tagAlign
195
bed broadPeak
186
bed bed3+
158
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
968
Homo sapiens
Biosample type
971
tissue
427
primary cell
134
cell line
128
in vitro differentiated cells
3
stem cell
Organ
201
kidney
153
heart
130
pancreas
100
bone element
95
liver
65
connective tissue
64
adipose tissue
62
blood vessel
62
vasculature
61
brain
49
eye
46
artery
31
limb
23
musculature of body
19
lung
16
skeleton
14
epithelium
12
nerve
8
spleen
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
877
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
107
hg19
Lab
681
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
86
inconsistent ontology term
audit script error
Audit category:
1
missing controlled_by
assay_title!
pCHi-C
audit.ERROR.category!
audit script error
files.file_type!
bigWig
organ_slims!
ureter
BIOSAMPLE
ASSAY
971 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
59
49
6
1
1
islet of Langerhans
42
65
32
6
3
1
4
liver
63
1
20
1
1
3
bone element
84
coronary artery
2
35
1
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