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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
5
total RNA-seq
4
DNase-seq
3
ChIP-seq
1
RRBS
Assay category
31
DNA accessibility
5
Transcription
3
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
31
February, 2023
October, 2019
7
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
40
Homo sapiens
Biosample type
35
tissue
5
primary cell
Organ
923
pancreas
781
liver
675
connective tissue
488
adipose tissue
485
epithelium
382
heart
315
kidney
198
brain
188
vasculature
182
blood vessel
158
bone element
115
artery
94
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
24
spleen
19
lung
18
ureter
16
skeleton
2
pericardium
1
nerve
1
spinal cord
1
vein
Project
40
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
40
AMP-T2D consortium
assay_title!
pCHi-C
audit.ERROR.category!
audit script error
month_released!
October, 2019
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
40 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
3
1
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