Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1363
ChIP-seq
1144
total RNA-seq
289
ATAC-seq
180
DNase-seq
180
single cell RNA-seq
87
RNA microarray
pCHi-C
28
WGBS
28
snATAC-seq
19
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1363
DNA binding
1342
Transcription
501
DNA accessibility
39
DNA methylation
19
3D chromatin structure
1
DNA sequencing
Target of assay
666
histone modification
665
histone
427
transcription factor
343
narrow histone mark
322
broad histone mark
270
control
93
RNA binding protein
89
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
640
February, 2021
397
November, 2017
284
August, 2017
273
August, 2021
268
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
60
May, 2021
56
November, 2019
47
September, 2023
40
May, 2024
34
December, 2018
30
January, 2019
27
March, 2020
25
February, 2020
23
October, 2017
21
December, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
4
March, 2019
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
1
October, 2022
Available data
2461
bam
2266
bigWig
1360
bed narrowPeak
1170
tsv
888
bigBed narrowPeak
776
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
207
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
3366
Homo sapiens
Biosample type
2724
tissue
1071
primary cell
655
cell line
389
in vitro differentiated cells
6
stem cell
Organ
732
liver
595
pancreas
546
connective tissue
487
adipose tissue
376
heart
316
kidney
263
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
94
epithelium
81
musculature of body
60
blood
60
bodily fluid
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
8
embryo
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
3272
AMP
47
KPMP
39
T1D
19
LungMap
2
community
Genome assembly (visualization)
2295
GRCh38
2255
hg19
Lab
2982
AMP-T2D consortium
142
Katalin Susztak, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
179
inconsistent ontology term
inconsistent control
9
audit script error
1
inconsistent replicate
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
assay_title!
pCHi-C
audit.ERROR.category!
inconsistent control
files.file_type!
bedpe
BIOSAMPLE
ASSAY
3379 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
...and 3 more
tissue
islet of Langerhans
71
292
68
1
6
7
2
1
4
1
adipose tissue
2
382
3
3
liver
118
167
20
2
1
3
1
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
+ See 167 more…
cell line
HepG2
378
14
1
1
2
2
EndoC_BH1
15
33
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
1
Panc1
13
1
1
+ See 11 more…
See all biosamples
Download