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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
708
ChIP-seq
220
ATAC-seq
150
DNase-seq
87
single cell RNA-seq
28
snATAC-seq
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1117
Transcription
708
DNA binding
402
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
501
histone modification
500
histone
273
narrow histone mark
227
broad histone mark
142
control
67
transcription factor
7
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
228
October, 2019
193
May, 2020
137
August, 2021
135
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
39
November, 2019
37
May, 2021
26
November, 2018
23
April, 2019
23
October, 2017
21
February, 2020
19
April, 2020
16
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1697
bam
1567
bigWig
947
tsv
762
bed narrowPeak
427
bigBed narrowPeak
319
fastq
238
tagAlign
185
bed broadPeak
177
bed bed3+
148
bigBed broadPeak
73
txt
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2270
Homo sapiens
Biosample type
2279
tissue
1009
primary cell
500
cell line
276
in vitro differentiated cells
6
stem cell
Organ
522
connective tissue
463
adipose tissue
453
pancreas
360
liver
heart
299
kidney
260
brain
132
blood vessel
132
vasculature
121
limb
80
musculature of body
74
bone element
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2183
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1619
GRCh38
1593
hg19
Lab
1968
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
audit.ERROR.category!
inconsistent ontology term
month_released!
October, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
2279 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
6
7
3
1
1
4
adipose tissue
382
2
3
3
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone tissue
58
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