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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
136
total RNA-seq
38
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
173
DNA binding
138
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
103
histone
103
histone modification
52
broad histone mark
50
narrow histone mark
38
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
56
August, 2017
40
August, 2021
39
February, 2018
30
December, 2017
26
February, 2021
12
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
285
bam
254
bigWig
134
fastq
132
bed narrowPeak
129
tsv
40
tagAlign
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
4
hic
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
358
Homo sapiens
Biosample type
2535
tissue
991
primary cell
641
cell line
358
in vitro differentiated cells
3
stem cell
Organ
78
connective tissue
25
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
358
AMP
Genome assembly (visualization)
265
hg19
241
GRCh38
4
hg18
Lab
306
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
9
inconsistent control read length
assay_title!
pCHi-C
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
358 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
55
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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