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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
81
ChIP-seq
42
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
81
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
111
May, 2021
28
August, 2021
26
August, 2017
26
February, 2021
23
February, 2018
19
December, 2017
16
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
207
bam
176
bigWig
129
tsv
70
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
5
bed bed3
5
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
272
Homo sapiens
Biosample type
2107
tissue
834
primary cell
606
cell line
272
in vitro differentiated cells
4
stem cell
Organ
54
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
heart
Project
272
AMP
Genome assembly (visualization)
213
hg19
182
GRCh38
4
hg18
Lab
238
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
pCHi-C
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
25
8
1
1
embryonic stem cell
7
18
6
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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