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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
WGBS
pCHi-C
1
DNase-seq
Assay category
62
Transcription
20
DNA binding
14
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
1
October, 2017
Available data
90
bam
88
txt
74
bigWig
58
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
182
Homo sapiens
Biosample type
182
tissue
Organ
891
pancreas
775
liver
662
connective tissue
503
epithelium
477
adipose tissue
heart
352
kidney
280
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
36
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
182
AMP
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
assay_title!
pCHi-C
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
BIOSAMPLE
ASSAY
182 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
20
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
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