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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
906
ChIP-seq
260
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
27
WGBS
27
snATAC-seq
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1155
Transcription
906
DNA binding
469
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
627
histone modification
626
histone
324
narrow histone mark
302
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
283
August, 2017
238
October, 2019
193
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
59
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1906
bam
1771
bigWig
1056
tsv
983
bed narrowPeak
560
bigBed narrowPeak
376
fastq
237
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
bedpe
1
tagAlign bed3+
Organism
2585
Homo sapiens
Biosample type
2593
tissue
1069
primary cell
654
cell line
386
in vitro differentiated cells
6
stem cell
Organ
546
connective tissue
496
pancreas
487
adipose tissue
360
liver
310
heart
263
brain
237
kidney
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
70
bone element
52
eye
43
nerve
24
spleen
19
lung
18
ureter
15
epithelium
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2497
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1858
GRCh38
1752
hg19
Lab
2306
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
45
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
assay_title!
pCHi-C
audit.WARNING.category!
inconsistent assembly
files.file_type!
bedpe
txt
BIOSAMPLE
ASSAY
2593 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
71
68
1
6
7
2
1
1
4
adipose tissue
382
2
3
3
liver
167
145
20
2
1
3
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
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