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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
ChIP-seq
576
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
pCHi-C
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
832
DNA binding
770
Transcription
462
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
594
histone modification
593
histone
311
narrow histone mark
282
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
236
October, 2019
228
August, 2021
223
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
39
November, 2019
23
February, 2020
22
October, 2017
20
March, 2020
19
April, 2020
19
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1408
bam
1290
bigWig
970
bed narrowPeak
600
tsv
550
bigBed narrowPeak
333
fastq
229
tagAlign
209
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2175
Homo sapiens
Biosample type
2182
tissue
1023
primary cell
654
cell line
293
in vitro differentiated cells
6
stem cell
Organ
connective tissue
497
pancreas
485
adipose tissue
359
liver
303
heart
298
kidney
262
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
78
musculature of body
73
artery
52
eye
43
nerve
22
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
2086
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1364
GRCh38
1263
hg19
Lab
1831
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
assay_title!
pCHi-C
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed bedMethyl
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2182 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
70
292
68
6
1
7
3
1
4
liver
145
167
20
1
2
1
1
3
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
2
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