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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
55
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
55
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
400
tsv
26
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
468
Homo sapiens
Biosample type
467
tissue
2
primary cell
Organ
904
pancreas
629
connective tissue
495
epithelium
469
adipose tissue
431
liver
343
heart
264
kidney
237
brain
211
vasculature
209
blood vessel
158
bone element
132
artery
86
limb
52
eye
49
musculature of body
41
nerve
34
embryo
19
lung
18
blood
18
bodily fluid
18
vein
17
spleen
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
469
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
469
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
audit.WARNING.category!
inconsistent assembly
files.file_type!
bed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
469 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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