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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
247
total RNA-seq
161
ATAC-seq
133
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
382
Transcription
278
DNA binding
228
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
190
May, 2021
147
May, 2020
88
February, 2023
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
47
February, 2021
43
April, 2018
40
September, 2020
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
612
bigWig
607
bam
408
fastq
294
bed narrowPeak
270
tsv
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
915
Homo sapiens
Biosample type
2746
tissue
915
primary cell
648
cell line
389
in vitro differentiated cells
6
stem cell
Organ
326
epithelium
266
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
555
AMP
188
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
626
hg19
535
GRCh38
Lab
520
AMP-T2D consortium
223
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
assay_title!
pCHi-C
audit.WARNING.category!
inconsistent control run_type
files.file_type!
csv
zippedFastqFolder
BIOSAMPLE
ASSAY
915 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
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