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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
174
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
2
June, 2019
2
March, 2020
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
158
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
389
Homo sapiens
Biosample type
cell line
360
tissue
15
in vitro differentiated cells
14
primary cell
Organ
679
connective tissue
671
pancreas
489
adipose tissue
389
liver
324
heart
293
epithelium
288
kidney
284
brain
169
vasculature
163
blood vessel
158
bone element
limb
95
musculature of body
75
artery
57
eye
43
nerve
29
embryo
24
spleen
22
vein
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
389
AMP
Genome assembly (visualization)
295
hg19
263
GRCh38
Lab
349
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
pCHi-C
biosample_type!
cell line
organ_slims!
limb
BIOSAMPLE
ASSAY
389 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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