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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
86
ChIP-seq
18
snATAC-seq
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
86
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
135
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
Organism
223
Homo sapiens
Biosample type
188
primary cell
30
tissue
5
cell line
Organ
34
pancreas
8
blood
8
bodily fluid
epithelium
Project
3638
AMP
223
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
182
GRCh38
182
hg19
Lab
219
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
txt
lab.title!
Katalin Susztak, Upenn
organ_slims!
epithelium
BIOSAMPLE
ASSAY
223 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
cell line
EndoC_BH1
3
2
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