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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
85
ChIP-seq
18
snATAC-seq
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
85
DNA binding
29
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
136
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
March, 2020
Available data
181
bam
181
bigWig
96
tsv
85
bed narrowPeak
84
tagAlign
Organism
220
Homo sapiens
Biosample type
188
primary cell
26
tissue
6
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
epithelium
Project
3437
AMP
324
HPAP
220
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
181
GRCh38
181
hg19
Lab
219
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
pCHi-C
month_released!
March, 2020
organ_slims!
liver
ovary
BIOSAMPLE
ASSAY
220 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
cell line
EndoC_BH1
1
3
2
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