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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
86
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
October, 2017
12
February, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
237
Homo sapiens
Biosample type
227
tissue
10
primary cell
Organ
830
pancreas
574
connective tissue
486
adipose tissue
399
epithelium
369
liver
293
heart
257
kidney
237
brain
158
bone element
152
vasculature
150
blood vessel
86
limb
71
artery
53
eye
49
musculature of body
41
nerve
23
spleen
19
lung
18
vein
16
skeleton
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
237
AMP
Genome assembly (visualization)
171
GRCh38
127
hg19
Lab
237
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_title!
pCHi-C
biosample_type!
cell line
in vitro differentiated cells
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
+ See 71 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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