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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
98
total RNA-seq
31
ATAC-seq
Assay category
171
DNA binding
98
Transcription
31
DNA accessibility
Target of assay
152
histone
152
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
6
RNA binding protein
3
control
Date released
170
May, 2021
45
May, 2020
40
May, 2024
20
May, 2022
14
August, 2021
7
August, 2020
3
September, 2020
1
October, 2017
Available data
300
bigWig
270
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
64
xls
63
txt
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
300
Homo sapiens
Biosample type
225
primary cell
61
tissue
14
cell line
in vitro differentiated cells
Organ
40
heart
34
liver
11
pancreas
10
epithelium
Project
180
T1D
110
AMP
10
HPAP
Genome assembly (visualization)
250
hg19
231
GRCh38
Lab
AMP-T2D consortium
215
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
in vitro differentiated cells
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
300 results
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ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
+ See 22 more…
tissue
left cardiac atrium
40
liver
20
islet of Langerhans
1
cell line
HepG2
14
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